Planning
Monday, September 12, 2022
| Time |
Event |
(+)
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08:15 - 08:45
|
Welcoming - Welcoming of participants and poster/presentations logistics |
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08:50 - 09:00
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Opening ceremony - Chairman |
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09:00 - 10:50
|
Prokaryotic Synthetic Biology |
(+)
|
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09:00 - 09:30 |
› SynBio at a global scale: from the Petri dish to planet Earth - Victor de Lorenzo, Systems Biology Program, National Center for Biotechnology |
|
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09:30 - 10:00 |
› Addressable Phase-separated RNAs in E. coli - Ariel Lindner, Systems Engineering and Evolution Dynamics U1284 |
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10:30 - 10:50 |
› Synthetic toxin-intein combinations as genetic weapons for specific killing of pathogenic bacteria in complex populations. - Didier MAZEL, Bacterial Genome Plasticity, Institut Pasteur (France) |
|
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10:50 - 11:10
|
Coffee break |
|
|
11:10 - 12:10
|
Prokaryotic Synthetic Biology |
(+)
|
|
11:10 - 11:30 |
› A synthetic communication system uncovers self-jamming of M13 transmission - Amit Pathania, Molecular Microbiology of Actinobacteria, CNRS (France) |
|
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11:30 - 11:50 |
› Exotic and xenobiotic deviations from the set of canonical nucleotides - Valérie Pezo, UMR 8030 LiSSB |
|
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11:50 - 12:10 |
› Implementation of a synthetic formate assimilation pathway in Escherichia coli by adaptive evolution - Madeleine Bouzon Bloch, Génomique métabolique, CEA UMR Génomique Métabolique |
|
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12:10 - 14:00
|
Lunch + Poster |
|
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14:00 - 14:50
|
Prokaryotic Synthetic Biology |
(+)
|
|
14:00 - 14:20 |
› Shape control of minimal cells by reconstitution of Spiroplasma citri cytoskeleton - Bastien Lambert, Bio 2.0, Soft Micro Systems, CNRS (France) |
|
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14:20 - 14:50 |
› Genomics driven discovery of anti-phage systems. - Aude Bernheim, U1284 SEED, IAME, INSERM |
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14:50 - 15:20
|
Philosophy |
(+)
|
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14:50 - 15:20 |
› Function: the concept that (almost) everyone uses but no one really knows - and why it matters - Alberto MOLINA PEREZ, Institute for advanced social studies, Spanish National Research Council |
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15:20 - 15:50
|
Coffee break + Poster session |
|
|
15:50 - 17:10
|
Eukaryotic Synthetic Biology |
(+)
|
|
15:50 - 16:20 |
› Anti-CRISPR protein technologies for precision genome editing - Dominik Niopek, Technical University of Darmstadt |
|
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16:20 - 16:50 |
› Improving CAR-T cell safety and efficacy through computational protein design - Leo Scheller, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne |
|
|
16:50 - 17:10 |
› Photocaged Transcriptional Activators for Optogenetic Gene Expression Control - Nicholas Southern, Technical University of Darmstadt |
|
Tuesday, September 13, 2022
| Time |
Event |
(+)
|
|
09:10 - 09:30
|
Welcoming |
|
|
09:30 - 10:50
|
Molecular programming and Systems Biology |
(+)
|
|
09:30 - 10:00 |
› Towards the computational design of genetically encodable nanomachines - Alexis Courbet, University Of Washington, Institute for Protein Design |
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10:00 - 10:30 |
› A deep unsupervised language model for protein design - Noelia Ferruz, University of Girona, University of Bayreuth |
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10:30 - 10:50 |
› Artificial Metabolic Networks: enabling neural computations with metabolic networks - Leon Faure, Université Paris-Saclay |
|
|
10:50 - 11:20
|
Coffee break + Poster session |
|
|
11:20 - 12:10
|
Molecular programming and Systems Biology |
(+)
|
|
11:20 - 11:50 |
› Design and implementation of de novo biosynthetic cascades for organic synthesis - Sabine Flitsch, The University of Manchester |
|
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11:50 - 12:10 |
› Latent Dirichlet Allocation for Double Clustering (LDA-DC): Discovering patients phenotypes and cell populations within a single Bayesian framework - Elie-Julien El hachem, Sorbonne University, INSERM, Nutrition and Obesities: systemic approaches, NutriOmique, 91 Boulevard de l'hôpital, 75013 Paris, France |
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|
12:10 - 14:00
|
Lunch + poster |
|
|
14:00 - 15:00
|
Molecular programming and Systems Biology |
(+)
|
|
14:00 - 14:20 |
› Towards engineering a native bacterial microcompartment system in Escherichia coli. - Denis Jallet, Toulouse Biotechnology Institute |
|
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14:20 - 14:40 |
› Paclitaxel Causes Cardiac Failure by Inhibiting Voltage-Gated Potassium Current: Insight from an In Silico Study - Chitaranjan Mahapatra, Paris-Saclay Institute of Neuroscience |
|
|
14:40 - 15:00 |
› Protein Design with Automated Reasoning and Deep Learning - Marianne Defresne, Institut National des Sciences Appliquées |
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15:00 - 15:30
|
Coffee break + Poster session |
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15:30 - 16:20
|
Natural Product discovery and Metabolic engineering |
(+)
|
|
15:30 - 16:00 |
› Scalable microbial metabolite discovery through synthetic biology - Vincent Libis, Université Paris Cité, Inserm, System Engineering and Evolution Dynamics, Paris |
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16:00 - 16:20 |
› The Automated Galaxy-SynBioCAD Pipeline for Synthetic Biology Design and Engineering - Joan Herisson, Génoscope UMR 8230, University of Paris-Saclay - Evry |
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|
16:20 - 18:00
|
IRN's member meeting |
|
Wednesday, September 14, 2022
| Time |
Event |
(+)
|
|
08:00 - 08:30
|
Welcoming |
|
|
08:30 - 10:10
|
Cell-free systems and Build-a-cell |
(+)
|
|
08:30 - 09:00 |
› Building a synthetic cell via evolution - Christophe Danelon, TU Delft |
|
|
09:00 - 09:30 |
› A New Spin on Efficient Reconstitution of Biological Systems in GUVs - Kristina Ganzinger, AMOLF, Amsterdam |
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|
09:30 - 09:50 |
› Cell-free biosynthesis combined with deep learning accelerates de novo development of antimicrobial peptides - Amir Pandi, Max Planck Institute for Terrestrial Microbiology |
|
|
09:50 - 10:10 |
› Enzyme reactions in coacervates droplets as artificial membraneless organelles - Nicolas Martin, Centre de Recherche Paul Pascal |
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10:10 - 10:30
|
Coffee break |
|
|
10:30 - 11:10
|
Cell-free systems and Build-a-cell |
(+)
|
|
10:30 - 10:50 |
› PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2 as Signal Integrator - Paul Soudier, MICrobiologie de lÁLImentation au Service de la Santé, Centre de Biochimie Structurale [Montpellier] |
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10:50 - 11:10 |
› Optimized cell-free protein synthesis using unprotected linear dna from exonuclease-deficient cellular extracts - Angelo Cardoso Batista, MICrobiologie de lÁLImentation au Service de la Santé |
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11:10 - 11:30
|
End word and poster prize - Closure ceremony |
|
|
11:30 - 13:00
|
Workshop - iGEM presentations |
(+)
|
|
11:30 - 11:45 |
› Electricia coli - Paul Weimer, Evry_Paris-Saclay IGEM team |
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|
11:45 - 12:00 |
› The CO2CURE project: Development of autotrophic Streptomyces capable of producing molecules of interest such as antibiotics by carbon fixation - Kenza BEAUNOL, iGEM team GO_Paris-Saclay - Nathan JOYET, iGEM team GO_Paris-Saclay - Raphaël VATIN, iGEM team GO_Paris-Saclay - Mahnaz SABETI AZAD, MICALIS, iGEM team GO_Paris-Saclay |
|
|
12:00 - 12:15 |
› iGEM IONIS Paris - StarchLight - Solène Galpy, Galpy - Chloé Bonef, Bonef - Alexandre Trubert, Trubert - Axelle Dieumegard, Dieumegard - Martin Pezous, Pezous |
|
|
12:15 - 12:30 |
› The NAWI Project - Bastien Camillo, iGEM Team Sorbonne_U_Paris - Jeanne Gallix, iGEM Team Sorbonne_U_Paris - Luca Donati, iGEM Team Sorbonne_U_Paris - Vitushanie Yogaranjan, iGEM Team Sorbonne_U_Paris |
|
|
12:30 - 12:45 |
› Lighting up the future of agriculture: Fiat Lux, a biosynthetic tool to track pathogenic bacteria in plants - Madeleine Bourseul, Student |
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12:45 - 13:00 |
› A synthetic biology toolkit to interface genetic circuits with electronics - Louise Destouches, Centre de Recherches Interdisciplinaires [Paris] - Florence Heng, Centre de Recherches Interdisciplinaires [Paris] |
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12:00 - 14:00
|
Lunch |
|
|
14:00 - 15:30
|
Workshop - Synthetic Biology of lactic acid bacteria (Tools for LAB engineering) |
(+)
|
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14:15 - 14:30 |
› Use of recombinant Lactic Acid Bacteria to treat infectious diseases: a focus on human papillomavirus (HPV)-induced cancer - LUIS BERMUDEZ, Institut MICALIS, INRAE |
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14:30 - 14:45 |
› Genetic toolbox for lactic acid bacteria - Elsa FRISTOT, Centre de Biochimie Structurale [Montpellier] |
|
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14:45 - 15:00 |
› Novel genetic modules encoding high-level antibiotic-free protein expression in probiotic Lactobacillus - Marc Blanch Asensio, Bioprogrammable Materials Group, Leibniz Institute for New Materials (Saarbrücken) - Sourik Dey, Bioprogrammable Materials Group, Leibniz Institute for New Materials (Saarbrücken) |
|
|
15:00 - 15:15 |
› The pSIP-system as a tool for genetic engineering of Lactobacillales - Kamilla Wiull, Norwegian University of Life Sciences |
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15:15 - 15:30 |
› The phage mv4 recombination system: towards a reprogrammable tool for bacterial genome engineering? - Kevin Debatisse, BLADE - Bacterial Adaptation, Diversity and Engineering |
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15:30 - 15:45
|
Coffee break |
|
|
15:45 - 17:30
|
Workshop - Synthetic Biology of lactic acid bacteria (Applications of recombinant LAB) |
(+)
|
|
15:45 - 16:00 |
› Potential use of recombinant biocontained lactococci to deliver the antiprotease elafin in IBD patients - Philippe langella, INRAE, Interactions des Bactéries Commensales et Probiotiques avec l\'Hôte |
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|
16:00 - 16:15 |
› Potential and opportunities for use of recombinant lactic acid bacteria in the gut - Catherine DANIEL, "Cellular Microbiology and Physics of infection" - CIIL - U1019-UMR9017 |
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16:15 - 16:30 |
› Engineered Lactococcus lactis with simultaneous tumor antigen targeting and proinflammatory cytokine binding ability - Aleš Berlec, Department of Biotechnology, Jožef Stefan Institute, Faculty of Pharmacy, University of Ljubljana |
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16:30 - 16:45 |
› Use of recombinant LAB as cDNA delivery vehicle and its applications - jean-marc chatel, INRAE |
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