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Monday, September 12, 2022
| Time | Event | (+) |
| 08:15 - 08:45 | Welcoming - Welcoming of participants and poster/presentations logistics | |
| 08:50 - 09:00 | Opening ceremony - Chairman | |
| 09:00 - 10:50 | Prokaryotic Synthetic Biology | (+) |
| 09:00 - 09:30 | › SynBio at a global scale: from the Petri dish to planet Earth - Victor de Lorenzo, Systems Biology Program, National Center for Biotechnology | |
| 09:30 - 10:00 | › Addressable Phase-separated RNAs in E. coli - Ariel Lindner, Systems Engineering and Evolution Dynamics U1284 | |
| 10:30 - 10:50 | › Synthetic toxin-intein combinations as genetic weapons for specific killing of pathogenic bacteria in complex populations. - Didier MAZEL, Bacterial Genome Plasticity, Institut Pasteur (France) | |
| 10:50 - 11:10 | Coffee break | |
| 11:10 - 12:10 | Prokaryotic Synthetic Biology | (+) |
| 11:10 - 11:30 | › A synthetic communication system uncovers self-jamming of M13 transmission - Amit Pathania, Molecular Microbiology of Actinobacteria, CNRS (France) | |
| 11:30 - 11:50 | › Exotic and xenobiotic deviations from the set of canonical nucleotides - Valérie Pezo, UMR 8030 LiSSB | |
| 11:50 - 12:10 | › Implementation of a synthetic formate assimilation pathway in Escherichia coli by adaptive evolution - Madeleine Bouzon Bloch, Génomique métabolique, CEA UMR Génomique Métabolique | |
| 12:10 - 14:00 | Lunch + Poster | |
| 14:00 - 14:50 | Prokaryotic Synthetic Biology | (+) |
| 14:00 - 14:20 | › Shape control of minimal cells by reconstitution of Spiroplasma citri cytoskeleton - Bastien Lambert, Bio 2.0, Soft Micro Systems, CNRS (France) | |
| 14:20 - 14:50 | › Genomics driven discovery of anti-phage systems. - Aude Bernheim, U1284 SEED, IAME, INSERM | |
| 14:50 - 15:20 | Philosophy | (+) |
| 14:50 - 15:20 | › Function: the concept that (almost) everyone uses but no one really knows - and why it matters - Alberto MOLINA PEREZ, Institute for advanced social studies, Spanish National Research Council | |
| 15:20 - 15:50 | Coffee break + Poster session | |
| 15:50 - 17:10 | Eukaryotic Synthetic Biology | (+) |
| 15:50 - 16:20 | › Anti-CRISPR protein technologies for precision genome editing - Dominik Niopek, Technical University of Darmstadt | |
| 16:20 - 16:50 | › Improving CAR-T cell safety and efficacy through computational protein design - Leo Scheller, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne | |
| 16:50 - 17:10 | › Photocaged Transcriptional Activators for Optogenetic Gene Expression Control - Nicholas Southern, Technical University of Darmstadt |
Tuesday, September 13, 2022
| Time | Event | (+) |
| 09:10 - 09:30 | Welcoming | |
| 09:30 - 10:50 | Molecular programming and Systems Biology | (+) |
| 09:30 - 10:00 | › Towards the computational design of genetically encodable nanomachines - Alexis Courbet, University Of Washington, Institute for Protein Design | |
| 10:00 - 10:30 | › A deep unsupervised language model for protein design - Noelia Ferruz, University of Girona, University of Bayreuth | |
| 10:30 - 10:50 | › Artificial Metabolic Networks: enabling neural computations with metabolic networks - Leon Faure, Université Paris-Saclay | |
| 10:50 - 11:20 | Coffee break + Poster session | |
| 11:20 - 12:10 | Molecular programming and Systems Biology | (+) |
| 11:20 - 11:50 | › Design and implementation of de novo biosynthetic cascades for organic synthesis - Sabine Flitsch, The University of Manchester | |
| 11:50 - 12:10 | › Latent Dirichlet Allocation for Double Clustering (LDA-DC): Discovering patients phenotypes and cell populations within a single Bayesian framework - Elie-Julien El hachem, Sorbonne University, INSERM, Nutrition and Obesities: systemic approaches, NutriOmique, 91 Boulevard de l'hôpital, 75013 Paris, France | |
| 12:10 - 14:00 | Lunch + poster | |
| 14:00 - 15:00 | Molecular programming and Systems Biology | (+) |
| 14:00 - 14:20 | › Towards engineering a native bacterial microcompartment system in Escherichia coli. - Denis Jallet, Toulouse Biotechnology Institute | |
| 14:20 - 14:40 | › Paclitaxel Causes Cardiac Failure by Inhibiting Voltage-Gated Potassium Current: Insight from an In Silico Study - Chitaranjan Mahapatra, Paris-Saclay Institute of Neuroscience | |
| 14:40 - 15:00 | › Protein Design with Automated Reasoning and Deep Learning - Marianne Defresne, Institut National des Sciences Appliquées | |
| 15:00 - 15:30 | Coffee break + Poster session | |
| 15:30 - 16:20 | Natural Product discovery and Metabolic engineering | (+) |
| 15:30 - 16:00 | › Scalable microbial metabolite discovery through synthetic biology - Vincent Libis, Université Paris Cité, Inserm, System Engineering and Evolution Dynamics, Paris | |
| 16:00 - 16:20 | › The Automated Galaxy-SynBioCAD Pipeline for Synthetic Biology Design and Engineering - Joan Herisson, Génoscope UMR 8230, University of Paris-Saclay - Evry | |
| 16:20 - 18:00 | IRN's member meeting |
Wednesday, September 14, 2022
| Time | Event | (+) |
| 08:00 - 08:30 | Welcoming | |
| 08:30 - 10:10 | Cell-free systems and Build-a-cell | (+) |
| 08:30 - 09:00 | › Building a synthetic cell via evolution - Christophe Danelon, TU Delft | |
| 09:00 - 09:30 | › A New Spin on Efficient Reconstitution of Biological Systems in GUVs - Kristina Ganzinger, AMOLF, Amsterdam | |
| 09:30 - 09:50 | › Cell-free biosynthesis combined with deep learning accelerates de novo development of antimicrobial peptides - Amir Pandi, Max Planck Institute for Terrestrial Microbiology | |
| 09:50 - 10:10 | › Enzyme reactions in coacervates droplets as artificial membraneless organelles - Nicolas Martin, Centre de Recherche Paul Pascal | |
| 10:10 - 10:30 | Coffee break | |
| 10:30 - 11:10 | Cell-free systems and Build-a-cell | (+) |
| 10:30 - 10:50 | › PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2 as Signal Integrator - Paul Soudier, MICrobiologie de lÁLImentation au Service de la Santé, Centre de Biochimie Structurale [Montpellier] | |
| 10:50 - 11:10 | › Optimized cell-free protein synthesis using unprotected linear dna from exonuclease-deficient cellular extracts - Angelo Cardoso Batista, MICrobiologie de lÁLImentation au Service de la Santé | |
| 11:10 - 11:30 | End word and poster prize - Closure ceremony | |
| 11:30 - 13:00 | Workshop - iGEM presentations | (+) |
| 11:30 - 11:45 | › Electricia coli - Paul Weimer, Evry_Paris-Saclay IGEM team | |
| 11:45 - 12:00 | › The CO2CURE project: Development of autotrophic Streptomyces capable of producing molecules of interest such as antibiotics by carbon fixation - Kenza BEAUNOL, iGEM team GO_Paris-Saclay - Nathan JOYET, iGEM team GO_Paris-Saclay - Raphaël VATIN, iGEM team GO_Paris-Saclay - Mahnaz SABETI AZAD, MICALIS, iGEM team GO_Paris-Saclay | |
| 12:00 - 12:15 | › iGEM IONIS Paris - StarchLight - Solène Galpy, Galpy - Chloé Bonef, Bonef - Alexandre Trubert, Trubert - Axelle Dieumegard, Dieumegard - Martin Pezous, Pezous | |
| 12:15 - 12:30 | › The NAWI Project - Bastien Camillo, iGEM Team Sorbonne_U_Paris - Jeanne Gallix, iGEM Team Sorbonne_U_Paris - Luca Donati, iGEM Team Sorbonne_U_Paris - Vitushanie Yogaranjan, iGEM Team Sorbonne_U_Paris | |
| 12:30 - 12:45 | › Lighting up the future of agriculture: Fiat Lux, a biosynthetic tool to track pathogenic bacteria in plants - Madeleine Bourseul, Student | |
| 12:45 - 13:00 | › A synthetic biology toolkit to interface genetic circuits with electronics - Louise Destouches, Centre de Recherches Interdisciplinaires [Paris] - Florence Heng, Centre de Recherches Interdisciplinaires [Paris] | |
| 12:00 - 14:00 | Lunch | |
| 14:00 - 15:30 | Workshop - Synthetic Biology of lactic acid bacteria (Tools for LAB engineering) | (+) |
| 14:15 - 14:30 | › Use of recombinant Lactic Acid Bacteria to treat infectious diseases: a focus on human papillomavirus (HPV)-induced cancer - LUIS BERMUDEZ, Institut MICALIS, INRAE | |
| 14:30 - 14:45 | › Genetic toolbox for lactic acid bacteria - Elsa FRISTOT, Centre de Biochimie Structurale [Montpellier] | |
| 14:45 - 15:00 | › Novel genetic modules encoding high-level antibiotic-free protein expression in probiotic Lactobacillus - Marc Blanch Asensio, Bioprogrammable Materials Group, Leibniz Institute for New Materials (Saarbrücken) - Sourik Dey, Bioprogrammable Materials Group, Leibniz Institute for New Materials (Saarbrücken) | |
| 15:00 - 15:15 | › The pSIP-system as a tool for genetic engineering of Lactobacillales - Kamilla Wiull, Norwegian University of Life Sciences | |
| 15:15 - 15:30 | › The phage mv4 recombination system: towards a reprogrammable tool for bacterial genome engineering? - Kevin Debatisse, BLADE - Bacterial Adaptation, Diversity and Engineering | |
| 15:30 - 15:45 | Coffee break | |
| 15:45 - 17:30 | Workshop - Synthetic Biology of lactic acid bacteria (Applications of recombinant LAB) | (+) |
| 15:45 - 16:00 | › Potential use of recombinant biocontained lactococci to deliver the antiprotease elafin in IBD patients - Philippe langella, INRAE, Interactions des Bactéries Commensales et Probiotiques avec l\'Hôte | |
| 16:00 - 16:15 | › Potential and opportunities for use of recombinant lactic acid bacteria in the gut - Catherine DANIEL, "Cellular Microbiology and Physics of infection" - CIIL - U1019-UMR9017 | |
| 16:15 - 16:30 | › Engineered Lactococcus lactis with simultaneous tumor antigen targeting and proinflammatory cytokine binding ability - Aleš Berlec, Department of Biotechnology, Jožef Stefan Institute, Faculty of Pharmacy, University of Ljubljana | |
| 16:30 - 16:45 | › Use of recombinant LAB as cDNA delivery vehicle and its applications - jean-marc chatel, INRAE |
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